I went through a not dissimilar process - recorded in the recent Fuji X Pro 1 thread. I was upgrading and older XE1 and couldn't decide between the XE2S with more glass and the XT1. In the end I went for the XE2S which is a huge upgrade on the XE1 but within a body I like and enjoy shooting with - and partly because it is closer to the X100 which I also own - the XE1 was at one time described as an X100 with changeable lenses
That said, I do still lust after an XT1 and, given that the XT2 is apparently going to be announced any day, may pick one up when prices tumble as people upgrade.
I prefer the rangefinder form so, not having the funding for an X Pro 2 stuck to the XE body. For me this suits prime shooting more, which is what I tend to do. If I was gong to use more telephotos the weight of the XT1 would have been more attractive. The XF 18 - 135, for example, looks a very versatile lens but is a lot chunkier and heavier than any of my current primes.
However, as Cesare says, there are no wrong answers, just lots of right ones.
Kevin