Cliff,
I've read the D3 manual (for a camera I don't own!) and seem to recall there being custom functions for altering the AF vs frame rate behaviour for servo mode.
Also, if the D3 is anything like canon you might be caught out by strange behaviour with how an initial lock is found. With the 1D even if you are using all 45 focus points for tracking, the lock is taken from the centre point, then once a lock is established it then uses the additional points to keep hold of the lock.
BTW i've never hit the 18 frame buffer limit on my 1D - but then i'm only shooting at 8fps ;-)
Cesare